Model classes and types

This table lists all supported model classes and types in this version of CellOrganizer

2D/3D	Model Class	Model Type	Depends on	Produces
2D	vesicle	gmm	nuclear_membrane & cell_membrane	vesicle
2D	nuclear_membrane	medial_axis	N/A	nuclear_membrane
2D	framework	pca	N/A	cell_membrane, nuclear_membrane
2D	cell_membrane	ratio	nuclear_membrane	cell_membrane
3D	vesicle	gmm	nuclear_membrane & cell_membrane	vesicle
3D	nuclear_membrane	cylindrical_surface	N/A	nuclear_membrane
3D	cell_membrane	ratio	nuclear_membrane	cell_membrane
2D	framework	diffeomorphic	N/A	cell_membrane, nuclear_membrane
3D	framework	diffeomorphic	N/A	cell_membrane, nuclear_membrane
3D	network	microtubule_growth	nuclear_membrane & cell_membrane	microtubule
3D	protein_distribution	morphing	N/A	protein spatial distribution
3D	standardized_voxels	standardized_map_half-ellipsoid	N/A	N/A
3D	csgo	half-ellipsoid	N/A	N/A
3D	framework	spharm_rpdm	N/A	cell membrane, nuclear membrane
3D	cell_membrane	spharm_rpdm	N/A	cell membrane
3D	nuclear_membrane	spharm_rpdm	cell_membrane	cell membrane, nuclear membrane
3D	standardized_voxels	standardized_map_half-ellipsoid	cell_membrane	cell membrane, nuclear membrane