CellOrganizer Documentation

• Introduction
• CellOrganizer Main Functions & Options
  • img2slml
  • slml2img
  • slml2info
  • slml2report
  • slml2slml
  • Options for Galaxy
  • Options for Docker with Jupyter Notebooks
• CellOrganizer for Matlab
  • About CellOrganizer for Matlab
  • Installing CellOrganizer locally
  • Installing CellOrganizer on a HPC
  • CellOrganizer in 45 Minutes
• CellOrganizer for Docker
  • About CellOrganizer for Docker
  • Installing CellOrganizer for Docker
  • Running CellOrganizer for Docker through Jupyter-Notebook
• CellOrganizer for Singularity
  • About CellOrganizer for Singularity
  • Installing CellOrganizer for Singularity
  • Running CellOrganizer for Singularity
• CellOrganizer for Galaxy
  • About CellOrganizer for Galaxy
  • Using Galaxy
  • Using CellOrganizer for Galaxy
  • CellOrganizer for Galaxy Tutorial
  • CellOrganizer for Galaxy Exercises
• Model classes and types
• Additional Information
  • Reproducing Figures from Research Articles
  • OME-TIFF
  • SBML Spatial Level 3
  • Virtual Cell
  • T cell models
  • Virtual Cell